Smith Waterman Local alignment of two nucleotide sequences
y = btd.swalign(x1, x2)
String of single-letter codes specifying a query nucleotide sequence
String of single-letter codes specifying a target nucleotide sequence
Alligned sequences
y = btd.swalign(x1, x2)
returns a 2-by-N character array showing the two sequences, Query and Target which are aligned using Smith Waterman Algorithm. The symbol _ indicates the gap introduced in the query or target..