Open Reading Frames found in a nucleotide sequence
y = btd_seqshoworfs(x)
String of single-letter codes specifying a nucleotide sequence
All open reading frames using the standard or an alternative genetic code (column of text: one frame per row).
nuSeq = 'TTTTTATTCTTTCTGCCAGGTACATCAGATCCATCAGGTCCGAGCTGTGTTGA'+.. 'CTACCACTGCTTTTCCCTTCGTCTCAGTTATGTCTTGGAAGAAGGCTTT'+.. 'GCGGATCCCCGGAGACCTTCGGGTAGCAACTGTCACCTTGATGCTGGCGATGCTGAGC'; y = btd_seqshoworfs(nuSeq) // To get only the frames: stripblanks(part(y,15:$)) | ![]() | ![]() |
--> y= btd_seqshoworfs(nuSeq) y = !Frame 1 : FLFFLPGTSDPSGPSCVDYHCFSLRLSYVLEEGFADPRRPSGSNCHLDAGDAE ! !Frame 2 : FYSFCQVHQIHQVRAVLTTTAFPFVSV*SWKKALRIPGDLRVATVTL*LA*LS ! !Frame 3 : FILSARYIRSIRSELC_LPLLFPSSQLCLGRRLCGSPETFG_QLSP_CWRC_ ! !Frame 4 : RVVAVVVPLST*GFQRPLGVSEEGSVLTLLPFSSPSVVSSLDYLDY*DRLSYF ! !Frame 5 : ES_RS_FHCQRWASRGP_AFRKKVLY_LCFPFRHHQLCRAWTT_TTWTVFLIF ! !Frame 6 : SRSGRSSTVNDGLPEAPRRFGRRFCIDSASLFVTISCVEPGLPRLHGPSFLF ! --> // To get only the frames: --> stripblanks(part(y,15:$)) ans = !FLFFLPGTSDPSGPSCVDYHCFSLRLSYVLEEGFADPRRPSGSNCHLDAGDAE ! !FYSFCQVHQIHQVRAVLTTTAFPFVSV*SWKKALRIPGDLRVATVTL*LA*LS ! !FILSARYIRSIRSELC_LPLLFPSSQLCLGRRLCGSPETFG_QLSP_CWRC_ ! !RVVAVVVPLST*GFQRPLGVSEEGSVLTLLPFSSPSVVSSLDYLDY*DRLSYF ! !ES_RS_FHCQRWASRGP_AFRKKVLY_LCFPFRHHQLCRAWTT_TTWTVFLIF ! !SRSGRSSTVNDGLPEAPRRFGRRFCIDSASLFVTISCVEPGLPRLHGPSFLF !