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ATOMS : Bioinformatics ToolBox from DCB details
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Bioinformatics ToolBox from DCB

Basic fuctions for Bioinformatics anlaysis
(2419 downloads for this version - 2419 downloads for all versions)
Details
Version
1.0
Author
Umesh P, Deepthi S, Priyadharshini K, Aswathi B L, Vidya R V, Biji C L, Achuthsankar S Nair
Owner Organization
Dept. of Computational Biology & Bioinformatics, University of Kerala, Thiruvananthapuram, Keralam
Maintainer
P. Umesh
Category
License
Creation Date
May 20, 2015
Source created on
Scilab 5.5.x
Binaries available on
Scilab 5.5.x:
Windows 64-bit Windows 32-bit Linux 64-bit Linux 32-bit MacOSX
Install command
--> atomsInstall("BTD")
Description
            BTD: Bio-informatics Toolbox from DCB is a toolbox developed by members of
Department of Computational Biology and Bioinformatics, University of Kerala,
Thiruvananthapuram, Keralam. Various functions have been developed for
processing Nucleotide and Protein sequences. 

Our Project students, Priyadarshini K and Jasmine Russel, and M.Sc students,
Anoop Ambika, Arya S A, Divya D R, Priyanka B R, Sangeetha Jayakumar, Sinumol
George, Sreejith R P and Suresh Kumar, have contributed their academic projects
as functions to the BTD Toolbox.

The set of functions in Bioinformatics toolbox are:
btd_CpG, btd_DNAword, btd_UpA, btd_aa2int, btd_aa2nt, btd_aacount,
btd_aadensity, btd_at2gcratio, btd_atcontent, btd_atomiccomp, btd_atomicweight,
btd_avg_hydrophobicity, btd_basecomp, btd_basecount, btd_cleave, btd_codoncount,
btd_codonusage, btd_dna2rna, btd_entropyamino, btd_entropydna,
btd_ext_coefficients, btd_exterior_volume, btd_gccontent, btd_getembl,
btd_getgenbank, btd_getgenpept, btd_getpdb, btd_getuniprot, btd_int2aa,
btd_interior_volume, btd_isoelectricpoint, btd_kmer, btd_lcdensity,
btd_molarabsortivity, btd_molweight, btd_nt2aa, btd_ntdensity,
btd_packingvolume, btd_proteinradius, btd_psv, btd_purinecomp,
btd_pyrimidinecomp, btd_randntseq, btd_randprotseq, btd_rho, btd_rna2dna,
btd_seqcomplement, btd_seqrcomplement, btd_seqshoworfs, btd_volumeratio             
Files (2)
[105.77 kB]
Source code archive

[216.12 kB]
OS-independent binary for Scilab 5.5.x
Binary version
Automatically generated by the ATOMS compilation chain

News (0)
Comments (2)     Leave a comment 
Comment from Sinumol George -- June 25, 2015, 09:23:57 AM    
Good Work..Congratz to whole team 
Comment from Beate Stahl -- March 21, 2017, 09:14:20 AM    
Hi, 
I would love to install you package on scilab 6.0.0 - I am new to Scilab and I can not 
install as it is not in my Module manager included. How can I get it in there- or do I 
need to install an older scilab version?

Thanks for help

Beate
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