Scilab Home Page | Wiki | Bug Tracker | Forge | Mailing List Archives | Scilab Online Help | File Exchange
ATOMS : Bioinformatics ToolBox from DCB details
Please login or create an account

Bioinformatics ToolBox from DCB

Basic fuctions for Bioinformatics anlaysis
(4048 downloads for this version - 5362 downloads for all versions)
A more recent valid version exists: 1.1
Umesh P, Deepthi S, Priyadharshini K, Aswathi B L, Vidya R V, Biji C L, Achuthsankar S Nair
Owner Organization
Dept. of Computational Biology & Bioinformatics, University of Kerala, Keralam
P. Umesh
Administrator Atoms
Samuel Gougeon
Creation Date
May 20, 2015
Source created on
Scilab 5.5.x
Binaries available on
Scilab 5.5.x:
Windows 64-bit Windows 32-bit Linux 64-bit Linux 32-bit MacOSX
Install command
--> atomsInstall("BTD")
            BTD: Bio-informatics Toolbox from DCB is a toolbox developed by members of
Department of Computational Biology and Bioinformatics, University of Kerala,
Thiruvananthapuram, Keralam. Various functions have been developed for
processing Nucleotide and Protein sequences. 

Our Project students, Priyadarshini K and Jasmine Russel, and M.Sc students,
Anoop Ambika, Arya S A, Divya D R, Priyanka B R, Sangeetha Jayakumar, Sinumol
George, Sreejith R P and Suresh Kumar, have contributed their academic projects
as functions to the BTD Toolbox.

The set of functions in Bioinformatics toolbox are:
btd_CpG, btd_DNAword, btd_UpA, btd_aa2int, btd_aa2nt, btd_aacount,
btd_aadensity, btd_at2gcratio, btd_atcontent, btd_atomiccomp, btd_atomicweight,
btd_avg_hydrophobicity, btd_basecomp, btd_basecount, btd_cleave, btd_codoncount,
btd_codonusage, btd_dna2rna, btd_entropyamino, btd_entropydna,
btd_ext_coefficients, btd_exterior_volume, btd_gccontent, btd_getembl,
btd_getgenbank, btd_getgenpept, btd_getpdb, btd_getuniprot, btd_int2aa,
btd_interior_volume, btd_isoelectricpoint, btd_kmer, btd_lcdensity,
btd_molarabsortivity, btd_molweight, btd_nt2aa, btd_ntdensity,
btd_packingvolume, btd_proteinradius, btd_psv, btd_purinecomp,
btd_pyrimidinecomp, btd_randntseq, btd_randprotseq, btd_rho, btd_rna2dna,
btd_seqcomplement, btd_seqrcomplement, btd_seqshoworfs, btd_volumeratio             
Files (2)
[105.77 kB]
Source code archive

[216.12 kB]
OS-independent binary for Scilab 5.5.x
Binary version
Automatically generated by the ATOMS compilation chain

News (0)
Comments (2)     Leave a comment 
Comment from Sinumol George -- June 25, 2015, 09:23:57 AM    
Good Work..Congratz to whole team 
Comment from Beate Stahl -- March 21, 2017, 09:14:20 AM    
I would love to install you package on scilab 6.0.0 - I am new to Scilab and I can not 
install as it is not in my Module manager included. How can I get it in there- or do I 
need to install an older scilab version?

Thanks for help

Leave a comment
You must register and log in before leaving a comment.
Email notifications
Send me email when this toolbox has changes, new files or a new release.
You must register and log in before setting up notifications.